RIKEN Brain Science Institute (RIKEN BSI) RIKEN BSI News No. 15 (Mar. 2002)




Brain Function in Relation to Its Structure

Dr. Tsutomu Hashikawa
Head, Laboratory for
Neural Architecture
Advanced Technology
Development Center (ATDC)

Introduction
Among research groups in the Brain Search Institute (BSI), the Advanced Technology Development Center (ATDC) is unique. There are no technology-oriented research groups like ATDC in the world. Since technological development is essential in achieving great advances in the field of brain science, ATDC was established to promote the development and application of research technology from the aspects of both hardware and software technologies, including improvement of facilities. In addition, through joint research collaborations with other organizations, ATDC aims to effectively transfer technology both within BSI and to non-BSI researchers in order to support them in their research efforts.
Our team for the development of nerve construction technology is involved in the improvement and development of microscopic analysis technology, and actively participates in joint research projects through its involvement in morphological analysis of various research projects. The following are our priorities with respect to technological development: 1) specimen preparation technology, which selectively visualizes cell components comprising nerve tissues and neural circuits, 2) technology for microscopic analysis of localization of intracellular functional/component molecules and the morphology of these molecules, and 3) technology for highly accurate analysis of the functional structure of cells comprising synapses. Just as the telescope is essential for astronomical observation, so is the microscope a reliable tool for observing the structure of the intrabrain, otherwise called the microcosm. We analyze brain structures that regulate brain functions using the latest microscopic observation techniques.


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Fig.A Immunostained image of pyramidal cells of the cerebral cortex. From a soma, one apical dendrite extends in the vertical direction, and many basal dendrites extend in the horizontal direction.

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Fig.B Purkinje cells of the cerebellar cortex. Axons that extend in a fan-shaped manner from soma ramify, similar to a dense forest.
Components of nerve tissuesneurons and gliacytes
For our first research topic, "Selective Visualization of Components of Nerve Tissues," we used both conventional optical microscopic observation technology and a laser scanning microscope.
The brain consists of two types of cells, namely, neurons and glia. Neurons process information transmitted through nerves by forming a complex circuit network, whereas glia support the function of neurons. In the brain, these cells are arranged systematically. Thus, the localization and arrangement of these cells and how they assemble to comprise nerve circuits need to be studied in detail in order to obtain a complete picture of the brain.
To observe the complex structure of the intrabrain using a microscope, appropriate specimens, optimal for the above-mentioned purpose, must be prepared. In general, thinly sliced specimens are developed for histostaining in order to study elements comprising the tissue, which are then subsequently subjected to microscopic observation. One of our frequently employed methods for preparing specimens is immunohistochemistry, which enables visualization of protein molecules specific to cells using an antigen-antibody reaction and detection of particular types of cells in the brain. Through a combination of the intracellular staining technique and immunohistochemistry, we aim to clarify the mechanisms underlying the formation of nerve circuits via different types of cells, specifically, the basic mechanisms of cell arrangement to form nerve circuits.
Neurons extend projections such as dendrites and axons originating from the soma, which have morphological characteristics completely different than cells of other organs in the body. The manner in which the projections are extended varies depending on the type of neuron. In our study, the intrabrain structures such as the cerebral cortex, the cerebellar cortex and the superior colliculus, which are formed in layers, are targeted for microscopic morphological analysis. This is because we are interested in the significance of the layered structure in localized nerve circuits. Here, we describe results of the staining. For example, when pyramidal cells are stained using the immunohistochemical method with the protein level of neurotubules as an index, we observe that long apical dendrites are extended toward the surface layer and basal dendrites are extended in all directions in the area adjacent to the soma (Fig. A). When Purkinje cells in the cerebellar cortex are stained using the immunohistochemical method with the calcium-binding protein (calbindin) level as an index, unusual fan-shaped dendrites that extend toward the surface layer appear (Fig. B). Since dendrites serve as an area in which neurons transmit information, that is, information is received in synapses, dendrites play a role as information antennae. Differences in the directions or shapes of dendrites reflect differences in information accumulation and processing functions of the cells. The specimens also contain axons that act as information transmitters. However, it is difficult to clarify in which direction axons extend for the following reasons: 1) they are extremely thin, 2) they can only be observed under high magnification, and 3) they are highly entangled since they extend from numerous cells; thus, a typical specimen is not optimal for clarifying axons. The tract-tracing technique is used to stain axons that communicate with an information receiver, and will be described elsewhere.
Here, we employ some types of glial cell as specimens for observation. With the recent developments in molecular biological research, the role of glia in neural tissue is being reexamined. We are currently working towards determining marker molecules of glial cells, developing an antibody for these marker molecules and morphologically detecting only glialccells. We are also developing a specific antibody against the thymosin protein which is a good marker of microglia, and will apply this specific antibody to brains in the developing stage or with human HuntingtonÕs disease, and analyze the behavior of microglia. The cerebellar cortex contains Bergmann glia with unusual shapes. We will also aim to clarify protein molecules which are observed only in this type of cell, develop a monoclonal antibody and perform immunohistochemical analysis of Bergmann glia.


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Fig.C Immunoelectron micrograph of a cell adhesion molecule, telencephalin. Black markers of this molecule (s) are observed in an area adjacent to the dendrite membrane, not in the postsynaptic density (PSD).

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Fig.D Electron micrograph of one calcium channel molecule stained by colloidal gold (g). This molecule, with a diameter of approximately 10 nm, consists of four sections (I~IV). A pore is formed at the center of four sections, through which calcium ions pass.
Ultrastructural analysis
The previously mentioned second and third specimens require analysis by means of an electron microscope. To analyze these specimens, we attempt to apply atomic force microscopy, orginally developed for observation of engineering specimens, to the analysis of neurons.
In order to observe the localization of intracellular molecules, immuno-electron microscopy, in which samples are immunostained, is often employed. Cases detected using this method are described below. One is our study on the localization of telencephalin molecules which are specifically expressed in neurons in the forebrain (Fig. C). Telencephalin is a cell adhesion molecule. However, it is an exceptional adhesion molecule among known cells that are localized in dendrites but not in axons. In Figure C, this molecule is shown immunostained with colloidal gold (diameter: 10 nm). Detailed observation reveals that a marker is observed not in the postsynaptic density (PSD) but in its periphery. The function of this molecule remains unclarified. However, results in Fig. C suggest that telencephalin may have a role different from the direct role in synaptic-transmission. Another study employing immunoelectron microscopy is the observation of calcium ion channel molecules in frozen fracture/replica specimens (Fig. D). These molecules are P/Q-type channel molecules stained by colloidal gold. Each of these molecules consists of four sections. A pore is formed at the center of the four sections, through which calcium ions pass. These molecules are a good example of morphological evidence of the structure of intracellular molecules that were initially formed based on a molecular model.
To study the ultrafine structure of neurons using techniques other than the above-mentioned immunoelectron microscopy, we used electron microscopic analytical technology, including electron energy loss spectroscopy for localized analysis of various elements inside tissues and scanning electron microscopy (SEM) for stereo structural analysis.


Conclusion
To clarify mechanisms of brain function, various research techniques, from the molecular level to even a system or social science level (e.g. in vitro experiments, recording, behavior analysis and construction of a theoretical model of nerve activities), are employed. The functional structure theoretically determined by such an analysis will be conclusive evidence of the functional structure if practically and morphologically confirmed in the brain. We believe that clarification of the brain structures which regulate its function and the development of morphological observation technologies required for such clarification are significant in attaining our goal.

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